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AT3G09735.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S1FA-like DNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S1FA-like DNA-binding protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); BEST Arabidopsis thaliana protein match is: S1FA-like DNA-binding protein (TAIR:AT2G37120.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC016661EMBL:AF380629EMBL:AK118970EMBL:AY054129EMBL:AY087186EMBL:CP002686EnsemblPlants:AT3G09735
EnsemblPlants:AT3G09735.1entrez:820131GeneID:820131Genevisible:Q93VI0GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT3G09735.1hmmpanther:PTHR35298HOGENOM:HOG000240777InParanoid:Q93VI0InterPro:IPR006779KEGG:ath:AT3G09735
OMA:KMKQGVQPaxDb:Q93VI0Pfam:PF04689Pfam:Q93VI0PRO:PR:Q93VI0Proteomes:UP000006548RefSeq:NP_566353.1
STRING:3702.AT3G09735.1TAIR:AT3G09735TMHMM:TMhelixUniGene:At.19100UniProt:Q93VI0
Coordinates (TAIR10) chr3:-:2986816..2987860
Molecular Weight (calculated) 8071.33 Da
IEP (calculated) 10.78
GRAVY (calculated) -0.13
Length 73 amino acids
Sequence (TAIR10)
(BLAST)
1: MAAEFDGKIE SKGLNPGLIV LLVIGGLLLT FLVGNFILYT YAQKNLPPRK KKPVSKKKMK KEKMKQGVQV PGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)