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AT3G09710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 1
Curator
Summary (TAIR10)
Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.
Computational
Description (TAIR10)
IQ-domain 1 (IQD1); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 11754 Blast hits to 5662 proteins in 558 species: Archae - 6; Bacteria - 955; Metazoa - 3083; Fungi - 1479; Plants - 916; Viruses - 133; Other Eukaryotes - 5182 (source: NCBI BLink).
Protein Annotations
BioGrid:5462eggNOG:ENOG410JXFNeggNOG:ENOG411040NEMBL:AC016661EMBL:AY827468EMBL:BT020272EMBL:BT020448
EMBL:CP002686EnsemblPlants:AT3G09710EnsemblPlants:AT3G09710.1entrez:820128ExpressionAtlas:Q9SF32GeneID:820128Genevisible:Q9SF32
GO:GO:0005634hmmpanther:PTHR32295hmmpanther:PTHR32295:SF28HOGENOM:HOG000238563InParanoid:Q9SF32IntAct:Q9SF32InterPro:IPR000048
iPTMnet:Q9SF32PaxDb:Q9SF32Pfam:PF00612Pfam:Q9SF32Pfscan:PS50096PhylomeDB:Q9SF32PRIDE:Q9SF32
PRO:PR:Q9SF32PROSITE:PS50096ProteinModelPortal:Q9SF32Proteomes:UP000006548RefSeq:NP_187582.1SMART:SM00015SMR:Q9SF32
STRING:3702.AT3G09710.2TAIR:AT3G09710tair10-symbols:IQD1UniGene:At.50163UniProt:Q9SF32
Coordinates (TAIR10) chr3:-:2976834..2978900
Molecular Weight (calculated) 50542.50 Da
IEP (calculated) 11.08
GRAVY (calculated) -0.98
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)