AT3G09650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2958704..2961040 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86966.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 778 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNILRPPTSS SSSSFPPYPK PVSLTPPVSF TLIHNPINLC SINPPFTNAG RPIFQRSASG TANSSAEDLS SFLGSPSEAY STHNDQELLF LLRNRKTDEA 101: WAKYVQSTHL PGPTCLSRLV SQLSYQSKPE SLTRAQSILT RLRNERQLHR LDANSLGLLA MAAAKSGQTL YAVSVIKSMI RSGYLPHVKA WTAAVASLSA 201: SGDDGPEESI KLFIAITRRV KRFGDQSLVG QSRPDTAAFN AVLNACANLG DTDKYWKLFE EMSEWDCEPD VLTYNVMIKL CARVGRKELI VFVLERIIDK 301: GIKVCMTTMH SLVAAYVGFG DLRTAERIVQ AMREKRRDLC KVLRECNAED LKEKEEEEAE DDEDAFEDDE DSGYSARDEV SEEGVVDVFK KLLPNSVDPS 401: GEPPLLPKVF APDSRIYTTL MKGYMKNGRV ADTARMLEAM RRQDDRNSHP DEVTYTTVVS AFVNAGLMDR ARQVLAEMAR MGVPANRITY NVLLKGYCKQ 501: LQIDRAEDLL REMTEDAGIE PDVVSYNIII DGCILIDDSA GALAFFNEMR TRGIAPTKIS YTTLMKAFAM SGQPKLANRV FDEMMNDPRV KVDLIAWNML 601: VEGYCRLGLI EDAQRVVSRM KENGFYPNVA TYGSLANGVS QARKPGDALL LWKEIKERCA VKKKEAPSDS SSDPAPPMLK PDEGLLDTLA DICVRAAFFK 701: KALEIIACME ENGIPPNKTK YKKIYVEMHS RMFTSKHASQ ARIDRRVERK RAAEAFKFWL GLPNSYYGSE WKLGPRED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)