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AT3G09650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.
Computational
Description (TAIR10)
HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
Protein Annotations
BioGrid:5456eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC016661EMBL:AK221619EMBL:CP002686EnsemblPlants:AT3G09650
EnsemblPlants:AT3G09650.1entrez:820122GeneID:820122Genevisible:Q9SF38GO:GO:0000166GO:GO:0003729GO:GO:0006397
GO:GO:0009570Gramene:AT3G09650.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF901HOGENOM:HOG000030475InParanoid:Q9SF38InterPro:IPR002885
KEGG:ath:AT3G09650ncoils:CoilOMA:MIKLCARPaxDb:Q9SF38Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q9SF38Pfscan:PS51375PhylomeDB:Q9SF38PRIDE:Q9SF38PRO:PR:Q9SF38PROSITE:PS51375ProteinModelPortal:Q9SF38
Proteomes:UP000006548RefSeq:NP_187576.1SMR:Q9SF38STRING:3702.AT3G09650.1TAIR:AT3G09650tair10-symbols:CRM3tair10-symbols:HCF152
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.40062UniGene:At.53240UniProt:Q9SF38
Coordinates (TAIR10) chr3:+:2958704..2961040
Molecular Weight (calculated) 86966.20 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.35
Length 778 amino acids
Sequence (TAIR10)
(BLAST)
001: MNILRPPTSS SSSSFPPYPK PVSLTPPVSF TLIHNPINLC SINPPFTNAG RPIFQRSASG TANSSAEDLS SFLGSPSEAY STHNDQELLF LLRNRKTDEA
101: WAKYVQSTHL PGPTCLSRLV SQLSYQSKPE SLTRAQSILT RLRNERQLHR LDANSLGLLA MAAAKSGQTL YAVSVIKSMI RSGYLPHVKA WTAAVASLSA
201: SGDDGPEESI KLFIAITRRV KRFGDQSLVG QSRPDTAAFN AVLNACANLG DTDKYWKLFE EMSEWDCEPD VLTYNVMIKL CARVGRKELI VFVLERIIDK
301: GIKVCMTTMH SLVAAYVGFG DLRTAERIVQ AMREKRRDLC KVLRECNAED LKEKEEEEAE DDEDAFEDDE DSGYSARDEV SEEGVVDVFK KLLPNSVDPS
401: GEPPLLPKVF APDSRIYTTL MKGYMKNGRV ADTARMLEAM RRQDDRNSHP DEVTYTTVVS AFVNAGLMDR ARQVLAEMAR MGVPANRITY NVLLKGYCKQ
501: LQIDRAEDLL REMTEDAGIE PDVVSYNIII DGCILIDDSA GALAFFNEMR TRGIAPTKIS YTTLMKAFAM SGQPKLANRV FDEMMNDPRV KVDLIAWNML
601: VEGYCRLGLI EDAQRVVSRM KENGFYPNVA TYGSLANGVS QARKPGDALL LWKEIKERCA VKKKEAPSDS SSDPAPPMLK PDEGLLDTLA DICVRAAFFK
701: KALEIIACME ENGIPPNKTK YKKIYVEMHS RMFTSKHASQ ARIDRRVERK RAAEAFKFWL GLPNSYYGSE WKLGPRED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)