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AT3G09600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Protein Annotations
BioGrid:5451eggNOG:ENOG410INV6eggNOG:ENOG4111HV1EMBL:AC016661EMBL:AJ937213EMBL:AY091106EMBL:AY122969
EMBL:AY550307EMBL:CP002686EnsemblPlants:AT3G09600EnsemblPlants:AT3G09600.1EnsemblPlants:AT3G09600.2entrez:820117ExpressionAtlas:Q8RWU3
Gene3D:1.10.10.60GeneID:820117Genevisible:Q8RWU3GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009651GO:GO:0009723GO:GO:0009733GO:GO:0009737GO:GO:0009739GO:GO:0009751
GO:GO:0009753GO:GO:0032922GO:GO:0043966GO:GO:0046686GO:GO:0048573hmmpanther:PTHR12802hmmpanther:PTHR12802:SF52
HOGENOM:HOG000237512InParanoid:Q8RWU3InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930iPTMnet:Q8RWU3
KEGG:ath:AT3G09600OMA:RVISPQHPaxDb:Q8RWU3Pfam:PF00249Pfam:Q8RWU3Pfscan:PS51294PhylomeDB:Q8RWU3
PRIDE:Q8RWU3PRO:PR:Q8RWU3PROSITE:PS51294ProteinModelPortal:Q8RWU3Proteomes:UP000006548RefSeq:NP_001030662.1RefSeq:NP_187571.2
SMART:SM00717SMR:Q8RWU3STRING:3702.AT3G09600.1SUPFAM:SSF46689TAIR:AT3G09600TIGRfam:TIGR01557TIGRFAMs:TIGR01557
UniGene:At.40072UniProt:Q8RWU3
Coordinates (TAIR10) chr3:+:2946459..2948270
Molecular Weight (calculated) 32802.80 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.59
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)