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AT3G09580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Protein Annotations
DNASU:820115eggNOG:COG1233eggNOG:ENOG410IGK0EMBL:AC016661EMBL:AY064000EMBL:AY117185EMBL:CP002686
EnsemblPlants:AT3G09580EnsemblPlants:AT3G09580.1entrez:820115Gene3D:3.50.50.60GeneID:820115GO:GO:0009507GO:GO:0009941
GO:GO:0016491Gramene:AT3G09580.1hmmpanther:PTHR10742hmmpanther:PTHR10742:SF287HOGENOM:HOG000250521InterPro:IPR002937InterPro:IPR023753
KEGG:ath:AT3G09580OMA:WSSIQGAPfam:PF01593PhylomeDB:Q9SF45Proteomes:UP000006548RefSeq:NP_187569.1SMR:Q9SF45
STRING:3702.AT3G09580.1SUPFAM:SSF51905TAIR:AT3G09580UniGene:At.27109UniGene:At.70028UniProt:Q9SF45
Coordinates (TAIR10) chr3:-:2942614..2944047
Molecular Weight (calculated) 52261.90 Da
IEP (calculated) 7.59
GRAVY (calculated) 0.01
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVAISLPTS STSHFFPRRR GHANHRYQRF SGAQSSTEDP YIRKNQTGVI IIGAGLAGLA AANQLTSKRI PFLLLEASDG VGGRVRTDIV DGFFLDRGFQ
101: IFITAYPEAK KLLDYEALDL QRFYAGAKVF YGGKFHTVAD PLRHFWDSVA SLANPIGSVV DKGLIALTRA RVLIKSDEEI LTAADEVPTI DLLRKIGFSE
201: TILDRFFRPF FGGIFFDRDL ETTSKLFDFV FRCLALGENT LPAMGIGEIS NQLAAKLPAK SVLLNTRVAS IEYPNGSGSD PPSVRLQDGS VMKAELGVII
301: AVEQPEVNKL LDGIRDPVIT KPARSTICLY FTAEPNQIPV QDPVLFLNGS NSGIINNMFF ATNVARTYAP PGKALVSVSL IGLFEDRTDD DLAAEVLREL
401: SGWFGESPVM SWKHLKTYRI QFAQPNQCPP TDLVKSPRVG SGLYLSGDYM TSATFDGALV SGRRAVEVLL RETGLIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)