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AT3G09570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.682
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT5G18520.1); Has 534 Blast hits to 530 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 259; Fungi - 16; Plants - 218; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAQeggNOG:KOG2569EMBL:AC016661EMBL:BT002532EMBL:BT006586EMBL:CP002686EnsemblPlants:AT3G09570
EnsemblPlants:AT3G09570.1entrez:820114GeneID:820114GO:GO:0016021Gramene:AT3G09570.1hmmpanther:PTHR21229hmmpanther:PTHR21229:SF26
HOGENOM:HOG000238447InterPro:IPR009637KEGG:ath:AT3G09570ncoils:CoilOMA:KVRTEMYPANTHER:PTHR21229Pfam:PF06814
Pfscan:PS51257PhylomeDB:Q9C5T6Proteomes:UP000006548RefSeq:NP_187568.1STRING:3702.AT3G09570.1TAIR:AT3G09570TMHMM:TMhelix
UniGene:At.27794UniGene:At.67612UniProt:Q9C5T6
Coordinates (TAIR10) chr3:+:2940524..2941843
Molecular Weight (calculated) 50086.50 Da
IEP (calculated) 6.11
GRAVY (calculated) 0.42
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRLPLFVVL LLFSASCITR TAAEIKSLTI SDDSRPMILF EKFGFTQSGH VSVSISSVAV VSSSSDPIPD PSRLGFFLMS EESLLQVVLE IEQNPNFCVL
101: DSNYVLHLFT FHDLSPPPGS KYEHLYPVMS PNEYSLFFVN CVPETKISMK VRTEMYNLDP NGSKDYLPAG STRLPGLYFF FSLGYLAFLG LWGYACWVNK
201: RVVHRIHVLM AALLLMKALN LICAAEDKHY VKVTGTPHGW DVLFYIFQFI RVVLLFTVIV LIGTGWSFLK PFLQEKEKNV LMVVVPLQVL ANIASIVIGE
301: TGPFIKDWVT WNQIFLLVDI VCCCAILFPI VWSIRSLRET SKTDGKAARN LAKLTLFRQF YIVVIGYLYF TRIVVFALKT IAAYKYRWVS NAAEEIASLA
401: FYMLMFYMFR PVEKNEYFVI DEEEEEAAEL ALKEDDFEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)