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AT3G09560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.911
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lipin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 (PAH1); CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 5210 Blast hits to 3195 proteins in 460 species: Archae - 22; Bacteria - 1897; Metazoa - 1353; Fungi - 717; Plants - 207; Viruses - 16; Other Eukaryotes - 998 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2137-MONOMERBioCyc:ARA:GQT-2138-MONOMEREC:3.1.3.4eggNOG:COG5083eggNOG:KOG2116EMBL:AC016661EMBL:AK229489
EMBL:CP002686EMBL:FJ591133EnsemblPlants:AT3G09560EnsemblPlants:AT3G09560.1EnsemblPlants:AT3G09560.2EnsemblPlants:AT3G09560.3entrez:820113
Gene3D:3.40.50.1000GeneID:820113Genevisible:Q9SF47GO:GO:0000139GO:GO:0005829GO:GO:0006629GO:GO:0006886
GO:GO:0008195GO:GO:0008654GO:GO:0016036GO:GO:0019375GO:GO:0032586Gramene:AT3G09560.1Gramene:AT3G09560.2
Gramene:AT3G09560.3hmmpanther:PTHR12181hmmpanther:PTHR12181:SF12HOGENOM:HOG000153456InParanoid:Q9SF47InterPro:IPR007651InterPro:IPR013209
InterPro:IPR023214InterPro:IPR031315InterPro:IPR031703iPTMnet:Q9SF47KEGG:00561+3.1.3.4KEGG:00564+3.1.3.4KEGG:00565+3.1.3.4
KEGG:00600+3.1.3.4KEGG:ath:AT3G09560KO:K15728OMA:SECKDEQPaxDb:Q9SF47Pfam:PF04571Pfam:PF08235
Pfam:PF16876Pfam:Q9SF47PhylomeDB:Q9SF47PRIDE:Q9SF47PRO:PR:Q9SF47ProMEX:Q9SF47ProteinModelPortal:Q9SF47
Proteomes:UP000006548Reactome:R-ATH-1483191Reactome:R-ATH-1483213Reactome:R-ATH-4419969Reactome:R-ATH-75109RefSeq:NP_001118604.1RefSeq:NP_187567.1
RefSeq:NP_974268.1SMART:SM00775STRING:3702.AT3G09560.1SUPFAM:SSF56784TAIR:AT3G09560tair10-symbols:ATPAH1tair10-symbols:PAH1
UniGene:At.18994UniProt:Q9SF47
Coordinates (TAIR10) chr3:-:2934953..2938673
Molecular Weight (calculated) 101008.00 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.64
Length 904 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVGRVGSL ISQGVYSVAT PFHPFGGAID VIVVQQQDGS FRSTPWYVRF GKFQGVLKGA EKFVRISVNG TEADFHMYLD NSGEAYFIRE VDPAANDTNN
101: LISGSENNNG NQNNGVTYRL EHSLSDSGTG ELREGFDPLS RLERTESDCN RRFYDFQDDP PSPTSEYGSA RFDNLNVESY GDSQGSDSEV VLVSIDGHIL
201: TAPVSVAEQE AENLRLNTPQ FHLAPGDGTE FCEGNTEFAS SETPWDTEYI DKVEESSDTA NIASDKVDAI NDERNDLDSH SRDNAEKDSH DAERDLLGSC
301: LEQSELTKTS ENVKSEEPGP TFEDRNLKEG EFPLRTIMEN DRSEDEVTIE SIDTLVDSFE SSTTQITIEE VKTTEGSRIS VDSNADSECK DEQTSAETAI
401: LFNNQESSIS VDSNADSECK DEQPRISAET AILINNQEGG IIESEDQDSE RVSIDSTREE VDKDNEDRKT VVSVGVTSSV DEGEPDTDQR YELSLCKDEL
501: RQGMGLSAAA EVFDAHMISK EEYINSATSI LESENLVVRI RETYMPWTKA ARIVLGKAVF DLDLDIQPDD VISVEENESP KPKDDETTIT PSSSGTRWRL
601: WPIPFRRVKT VEHTGSNSSS EEDLFVDSEP GLQNSPETQS TTESRHESPR RQLVRTNVPT NEQIASLNLK DGQNMITFSF STRVLGTQQV DAHIYRWRWD
701: TKIVISDVDG TITKSDVLGQ FMPFIGKDWT QSGVAKLFSA IKENGYQLLF LSARAIVQAY LTRNFLNNLK QDGKALPTGP VVISPDGLFP ALYREVIRRA
801: PHEFKIACLE DIRKLFPTDY NPFYAGFGNR DTDELSYRKL GIPKGKIFII NPKGEVATGH RIDVKKSYTS LHTLVNDMFP PTSLVEQEDY NPWNFWKLPI
901: EEVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)