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AT3G09540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G09540-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IGKFEMBL:AC016661EMBL:AK230462
EMBL:BT029552EMBL:CP002686EnsemblPlants:AT3G09540EnsemblPlants:AT3G09540.1entrez:820111Gene3D:2.160.20.10GeneID:820111
GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT3G09540.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF23HOGENOM:HOG000237948
InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G09540KO:K01728
OMA:SEWTVESPfam:PF00544PhylomeDB:Q9SF49PRINTS:PR00807Proteomes:UP000006548RefSeq:NP_187565.1SMART:SM00656
SMR:Q9SF49STRING:3702.AT3G09540.1SUPFAM:SSF51126TAIR:AT3G09540UniGene:At.40087UniPathway:UPA00545UniProt:Q9SF49
Coordinates (TAIR10) chr3:-:2929079..2931137
Molecular Weight (calculated) 41472.10 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.42
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLHGIHRS HHGGSNFPGE APNSPFPPPY TAAPAPAPAP SSPSDHHMTV GPYCHVDSSL RSLAGKAEGF GRAAVGGLNG PICHVTSLAD EGPGSLREAC
101: KRPEPLWIVF DVSGTINLSS FVNVSSHTTV DGRGQKVKIT GKGLRLKECE NVIICNLEFE GGVGPDADAI QIKPKSHNIW IDRCSLKNYY DGLIDITRES
201: TDITVSRCHF MNHNKTMLIG ADTSHVTDRC IRVTIHHCFF DGTRQRHPRV RFAKVHLFNN YTRHWAIYAV GAGVESQIHS QCNIYEAGEK KTVFKYITEK
301: AADKEKPGAG FVRSEGDLLL NGAKSCLSQG GERYVFSPIQ HYSEWTVESP TDILKNYLKH STGWQNLPLP LDRPPTTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)