AT3G09530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.626 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst subunit exo70 family protein H3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2926302..2928215 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72118.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSKSGFSFF SKMTSSRKRP SLSLPSKSHE STDVNKTIDN AAEIIEKWNT EYVSDKKFYS LFCESKRDAK KFVKRVKELQ NAMDLLIRED PNSEKLLRAQ 101: NLMQIAMKRL QKEFLQILSM NRAHLDPESI SSRSPTSVVS NDDDVWHESR SAGDSIIEVE EVSKNSRTEL KSIADCMIAA GCAKECATTY KSIRKSIVDE 201: SIYRLGVENI SSSKAKKMPC EVVELKMNRW IEAVKVSMKT LFNGEKTLCD EIFESSVSLR EFCFRDISKE GALLLFGFPE TITLRDKKNP HPEKIFPLLD 301: MYCTITDNLL AIEAIFSFPS ISNVRTQAHS SLSRLSESIL AHLMDFESQI RKDSSKTVVR GGGVHPMTIS AMNHISRLAE YSNALINILK GSSSSSSAKA 401: LLPKSYFNVS ESEESPVSEL KARFAWMILV LLCKIDGKAE MYKDFSMQYL FLANNLQHVV SRARSTNVKH VLGNDWIAKN SEKVRQFARS YERLAWGPLA 501: SMCPAISTSE AVEMSPEEAM MQFKKFNETF ESTCEAQSEC IVLDPKLLDE MRISIGRKLL PVYRDFYNAH RNAVMLAGTE GQWNVRYNPE DIGNHLSELF 601: SGKGISEKGY VCTPDFCVTT PTPTPVRKTR SLSCRRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)