AT3G09490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.569 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G02590.1); Has 963 Blast hits to 845 proteins in 243 species: Archae - 144; Bacteria - 518; Metazoa - 11; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2915636..2916640 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38412.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 334 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPATFQFS RTKLNLQINL VERKSPSKLS FPLLFRDQAK STPIRFPVIR ASSSSSASNH KPSLLKTTFI SLTAAAALFS ASFYFVNKRA AMTPVAVVET 101: TLEKHLETQS NDVNALSLLT EIKFKSDKHE QAIVFLDRLI EIEPYERKWP AMKARILSYH GKSESAIEAF EEILEKDPIR VDAYHYLVME YYNSKPKLTE 201: IEKRINKVIR RCKKEKKTKE ILGFRMLIAQ IRFIEGKSVE AIRICEELVK EDPNDFTIYL FQGVVYTLMN KGEEAAKQFE HVARVIPRNH PSRETAARTT 301: NSNEWRVIVA YDNVYCYLST FARLSMASLF NKFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)