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AT3G09490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G02590.1); Has 963 Blast hits to 845 proteins in 243 species: Archae - 144; Bacteria - 518; Metazoa - 11; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Protein Annotations
DNASU:820106EMBL:AC016661EMBL:BT029519EMBL:CP002686EnsemblPlants:AT3G09490EnsemblPlants:AT3G09490.1entrez:820106
Gene3D:1.25.40.10GeneID:820106GO:GO:0009543GO:GO:0019684Gramene:AT3G09490.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF76
HOGENOM:HOG000148619InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT3G09490ncoils:CoilOMA:EAIRICE
Pfam:PF13181Pfam:PF13371Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9SF54PROSITE:PS50005PROSITE:PS50293
Proteomes:UP000006548RefSeq:NP_187560.1SMART:SM00028SMR:Q9SF54STRING:3702.AT3G09490.1SUPFAM:SSF48452TAIR:AT3G09490
UniGene:At.28776UniGene:At.69028UniProt:Q9SF54
Coordinates (TAIR10) chr3:+:2915636..2916640
Molecular Weight (calculated) 38412.50 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.28
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPATFQFS RTKLNLQINL VERKSPSKLS FPLLFRDQAK STPIRFPVIR ASSSSSASNH KPSLLKTTFI SLTAAAALFS ASFYFVNKRA AMTPVAVVET
101: TLEKHLETQS NDVNALSLLT EIKFKSDKHE QAIVFLDRLI EIEPYERKWP AMKARILSYH GKSESAIEAF EEILEKDPIR VDAYHYLVME YYNSKPKLTE
201: IEKRINKVIR RCKKEKKTKE ILGFRMLIAQ IRFIEGKSVE AIRICEELVK EDPNDFTIYL FQGVVYTLMN KGEEAAKQFE HVARVIPRNH PSRETAARTT
301: NSNEWRVIVA YDNVYCYLST FARLSMASLF NKFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)