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AT3G09430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK95eggNOG:ENOG410ZCYUEMBL:AY954845EMBL:CP002686
EnsemblPlants:AT3G09430EnsemblPlants:AT3G09430.1entrez:820101GeneID:820101
Gramene:AT3G09430.1hmmpanther:PTHR37731HOGENOM:HOG000137499KEGG:ath:AT3G09430
OMA:GIGEYREPhylomeDB:Q58FW4Proteomes:UP000006548RefSeq:NP_187554.2
TAIR:AT3G09430UniGene:At.53234UniProt:Q58FW4
Coordinates (TAIR10) chr3:+:2901280..2902893
Molecular Weight (calculated) 33480.40 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.63
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSRSLV SSYTFDEKDL DDADLWAVID SAAAAATIAG KSPKPLAIRY PNYNSPPTPV SYPSPQSKIL QIPNRNPNLG RGLNEESNRP SKMARSRILS
101: EVKSETPMAL VTTAHRNSTP NIINSTKFSS PESYLSPGIR QPTPFAEVSP SASCVKNDPI NEMRHSLSGS FPSATLFKEY QNTAMAILEK SDYTMISGKA
201: YIKKSGWRKI SFYFNVSYEI RDKTIEFDEN RNVQRAEFIV RAIMHGGRFA DGWGSCERRE KKFLKPNHDI PSTAETRAKN RACQDLLGIG EYRESPAGLP
301: R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)