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AT3G09370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 3r-3
Curator
Summary (TAIR10)
putative c-myb-like transcription factor (MYB3R3) mRNA,
Computational
Description (TAIR10)
myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 12681 Blast hits to 8608 proteins in 562 species: Archae - 0; Bacteria - 0; Metazoa - 1169; Fungi - 1136; Plants - 7404; Viruses - 4; Other Eukaryotes - 2968 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AY142649EMBL:AY519651
EMBL:CP002686EnsemblPlants:AT3G09370EnsemblPlants:AT3G09370.1entrez:820094
ExpressionAtlas:Q8H1P9Gene3D:1.10.10.60GeneID:820094GO:GO:0003677
Gramene:AT3G09370.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF492HOGENOM:HOG000241478
IntAct:Q8H1P9InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
Pfam:PF00249Pfam:PF13921Pfscan:PS51294PhylomeDB:Q8H1P9
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_566350.1SMART:SM00717
SMR:Q8H1P9STRING:3702.AT3G09370.2SUPFAM:SSF46689TAIR:AT3G09370
tair10-symbols:AtMYB3R3tair10-symbols:MYB3R-3UniGene:At.11889UniProt:Q8H1P9
Coordinates (TAIR10) chr3:+:2879534..2882128
Molecular Weight (calculated) 56121.80 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.94
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTFNPAAS SPDEEETGEV KIEDQCVENK QSTPASCSSV SEGSAGSSHK SPTIASPATV SPTHRYLGRT SGPIRRAKGG WTPEEDETLR QAVDTFKGKS
101: WKNIAKSFPD RTEVQCLHRW QKVLNPDLIK GPWTHEEDEK IVELVEKYGP AKWSIIAQSL PGRIGKQCRE RWHNHLNPDI NKDAWTTEEE VALMNAHRSH
201: GNKWAEIAKV LPGRTDNAIK NHWNSSLKKK SEFYLLTGRL PPPTTTRNGV PDSVTKRSSS AQKRVFGSVA QTSSVTTDVN NLAEDGNGQI NSSVPVEEVV
301: AASRMTSLNE YARSPQLPNP EPLPENGGAA NNGYHLYYTP QIDYYRASEV DTQRMYGNEC GCSPSASPVS FFTPPPCRNV HSNGSTPRSP ESYLREAGRT
401: YPNTPSIFRK RRPRVVVQDN NNAKKTDEAK EVDQKVNDGK DSSEIQNNGS NAYNLSPPYR IRSKRTAVFK SRQLEFISRE EEKADDETKS SEKDMLIDGD
501: SQLLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)