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AT3G09360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclin/Brf1-like TBP-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT2G45100.1); Has 20615 Blast hits to 13314 proteins in 1023 species: Archae - 483; Bacteria - 1191; Metazoa - 7169; Fungi - 2226; Plants - 882; Viruses - 261; Other Eukaryotes - 8403 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1405eggNOG:KOG1598EMBL:AK226688EMBL:CP002686
EnsemblPlants:AT3G09360EnsemblPlants:AT3G09360.1entrez:820092Gene3D:1.10.472.10
GeneID:820092GO:GO:0000126GO:GO:0006355GO:GO:0006384
GO:GO:0008270Gramene:AT3G09360.1hmmpanther:PTHR11618hmmpanther:PTHR11618:SF4
HOGENOM:HOG000265442InterPro:IPR000812InterPro:IPR011665InterPro:IPR013150
InterPro:IPR013763InterPro:IPR029529KEGG:ath:AT3G09360KO:K15196
ncoils:CoilOMA:ISMAHRYPANTHER:PTHR11618PANTHER:PTHR11618:SF4
Pfam:PF00382Pfam:PF07741PhylomeDB:Q0WVQ3PRINTS:PR00685
Proteomes:UP000006548RefSeq:NP_187547.2SMART:SM00385SMR:Q0WVQ3
STRING:3702.AT3G09360.1SUPFAM:SSF47954TAIR:AT3G09360UniGene:At.53231
UniProt:Q0WVQ3
Coordinates (TAIR10) chr3:+:2873796..2878432
Molecular Weight (calculated) 68013.00 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.78
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MVWCNHCVKN VPGIRPYDGA LACNLCGRIL ENFHFSTEVT FVKNAAGQSQ ASGNIVRSVQ SGITSSRERR FRIARDELMN LKDALGIGDE RDDVIVIAAK
101: FFEMAVEQNF TKGRRTELVQ ASCLYLTCRE LNIALLLIDF SSYLRVSVYE LGSVYLQLCE MLYLVENRNY EKLVDPSIFM DRFSNSLLKG KNNKDVVATA
201: RDIIASMKRD WIQTGRKPSG ICGAALYTAA LSHGIKCSKT DIVNIVHICE ATLTKRLIEF GDTDSGNLNV NELRERESHK RSFTMKPTSN KEAVLCMHQD
301: SKPFGYGLCE DCYKDFINVS GGLVGGSNPP AFQRAEKERM EKAAREENEG GISSLNHDEQ LYSDYCSMSK RGKQCSEKGE KDKDGAEEHA DTSDESDNFS
401: DISDDEVNGY INNEEETHYK TITWTEMNKD YLEEQAAKEA ALKAASEALK ASNSNCPEDA RKAFEAAKAD AAKSRKEKQQ KKAEEAKNAA PPATAVEAVR
501: RTLDKKRLSS VINYDVLESL FDTSAPEKSP KRSKTETDIE KKKEENKEMK SNEHENGENE DEDEEDEEEG NVESYDMKTD FQNGEKFYEE DEEEEEDGND
601: FGLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)