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AT3G09250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 282 Blast hits to 282 proteins in 97 species: Archae - 0; Bacteria - 155; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN51eggNOG:ENOG4112AF5EMBL:AC011436EMBL:AY063867EMBL:AY087204EMBL:AY091221EMBL:CP002686
EnsemblPlants:AT3G09250EnsemblPlants:AT3G09250.1entrez:820081ExpressionAtlas:Q9SR38Gene3D:3.10.450.50GeneID:820081Gramene:AT3G09250.1
hmmpanther:PTHR34957hmmpanther:PTHR34957:SF1HOGENOM:HOG000238275IntAct:Q9SR38InterPro:IPR001943InterPro:IPR009959InterPro:IPR032710
OMA:LAWSSINPfam:PF02151Pfam:PF13474PhylomeDB:Q9SR38Proteomes:UP000006548RefSeq:NP_566347.1SMR:Q9SR38
STRING:3702.AT3G09250.2SUPFAM:SSF54427TAIR:AT3G09250UniGene:At.47576UniGene:At.71001UniProt:Q9SR38
Coordinates (TAIR10) chr3:+:2839080..2840294
Molecular Weight (calculated) 27509.70 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.33
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MALHGSGVFC KVSNMVEITS PFGGSMRLLH LPKSYPIHCN MVSASNTFGS AHLKLQNKEP CSRLRPCRVK REENNQTADV ESISMDENTL KQDLETAVQE
101: ENYVEAAKIR DKLKELQEDN KASVLSANSR FYQSFRNGDL AAMQSLWSKS GNPCCVHPGA KGITGYDYVM ESWELVWMNY EFPLLIELKD VEVHVRGEVG
201: YVTCMEFVKT KGSSSWGAQF VSNVFERIDG QWFICIHHAS PVDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)