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AT3G09085.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF962)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); Has 704 Blast hits to 704 proteins in 265 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4323eggNOG:ENOG410IZSREMBL:AY085953EMBL:BT002388
EMBL:BT006520EMBL:CP002686EnsemblPlants:AT3G09085EnsemblPlants:AT3G09085.1
entrez:820062GeneID:820062GO:GO:0016021Gramene:AT3G09085.1
hmmpanther:PTHR34205hmmpanther:PTHR34205:SF2HOGENOM:HOG000259428IntAct:Q8LDK7
InterPro:IPR009305KEGG:ath:AT3G09085OMA:PLYSLMGPfam:PF06127
PhylomeDB:Q8LDK7Proteomes:UP000006548RefSeq:NP_566342.1STRING:3702.AT3G09085.1
TAIR:AT3G09085TMHMM:TMhelixUniGene:At.16907UniGene:At.69661
UniGene:At.75248UniProt:Q8LDK7
Coordinates (TAIR10) chr3:+:2782238..2782576
Molecular Weight (calculated) 13170.40 Da
IEP (calculated) 9.27
GRAVY (calculated) 0.41
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)