AT3G09020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.814 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha 1,4-glycosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT5G01250.1); Has 364 Blast hits to 360 proteins in 67 species: Archae - 2; Bacteria - 16; Metazoa - 234; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2753307..2754542 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46854.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDHDITTKVR AMFDHRRLNR SGSSLFTAFA STVIALVVFT IVLVSNLSVR EDFSAKVVTI EIKTIVPYLP LSSEKEVSDQ VNNNYSIKQQ ITVKEEINKL 101: QVLEVFGGKD VSEKFQQRAT EFLRDDCEVK FMMTWISPAE LFGKREILSV ESVFKSHARG CLMILSSTMD SLQGFRILKP FLDRGYRVMA VTPDLPFLLK 201: DTAGESWLEE IQTGKRDPGK ISLAQNLSNL MRLAYLFKFG GVYLDTDMIV LKSFKTLRNV IGAQTLEPVS RNWTRLNNAV LIFDKNHPFL LKSIEEFALT 301: FNGNVWGHNG PYLVSRVARA VEGTDGYNFT ILTPPAFYPV NWVEIEKLFK VPRTEKDSKR VQVKVLEMQK RSYGLHLWNK FSRKFEIEQG SAMDKLVSNQ 401: CIICDSVVSV S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)