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AT3G08990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.925
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Yippee family putative zinc-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 986 Blast hits to 986 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111VJ1eggNOG:KOG3399EMBL:AC009326EMBL:AC010871EMBL:BT025705EMBL:CP002686EnsemblPlants:AT3G08990
EnsemblPlants:AT3G08990.1EnsemblPlants:AT3G08990.2entrez:820051GeneID:820051Genevisible:Q9SR97GO:GO:0046872Gramene:AT3G08990.1
Gramene:AT3G08990.2hmmpanther:PTHR13848hmmpanther:PTHR13848:SF5HOGENOM:HOG000184254InParanoid:Q9SR97InterPro:IPR004910KEGG:ath:AT3G08990
OMA:CITEDIVPaxDb:Q9SR97Pfam:PF03226Pfam:Q9SR97PhylomeDB:Q9SR97PRO:PR:Q9SR97PROSITE:PS51792
ProteinModelPortal:Q9SR97Proteomes:UP000006548RefSeq:NP_001189843.1RefSeq:NP_187511.2STRING:3702.AT3G08990.1TAIR:AT3G08990UniGene:At.49384
UniProt:Q9SR97
Coordinates (TAIR10) chr3:+:2743590..2744709
Molecular Weight (calculated) 14607.40 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.28
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRLFVIDLE GLVYSCKYCQ THFAVTNDII SKSFHCKHGR AYLFDNVVNV TVGEKEHRVM ITGWHTVADI FCVSCGSLVG WKYEIAYDKS QKYKEGKFIL
101: ERFKVLGPYG GGYDMNQNEP MTGSDDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)