AT3G08940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : light harvesting complex photosystem II | ||||||||
| Curator Summary (TAIR10) |
Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II | ||||||||
| Computational Description (TAIR10) |
light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 1155 Blast hits to 1131 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1079; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2717717..2718400 | ||||||||
| Molecular Weight (calculated) | 25003.00 Da | ||||||||
| IEP (calculated) | 8.05 | ||||||||
| GRAVY (calculated) | 0.02 | ||||||||
| Length | 227 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK 101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVSP LFFSSLLRLC LAFRHLSDCF IFNLPGRASG 201: WIILLRTAIA VLYLDIDMDR SVSDRLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)