suba logo
AT3G08920.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G42220.1); Has 237 Blast hits to 237 proteins in 53 species: Archae - 0; Bacteria - 52; Metazoa - 3; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDX6eggNOG:ENOG4111PM4EMBL:AC010871EMBL:AY074549EMBL:AY087039EMBL:BT002325EMBL:CP002686
EnsemblPlants:AT3G08920EnsemblPlants:AT3G08920.1entrez:820041Gene3D:3.40.250.10GeneID:820041Genevisible:Q9SR92GO:GO:0009507
GO:GO:0009534GO:GO:0009941GO:GO:0016021Gramene:AT3G08920.1hmmpanther:PTHR12231hmmpanther:PTHR12231:SF111HOGENOM:HOG000239976
InParanoid:Q9SR92InterPro:IPR001763KEGG:ath:AT3G08920OMA:PAWEREKPaxDb:Q9SR92Pfam:PF00581Pfam:Q9SR92
Pfscan:PS50206PhylomeDB:Q9SR92PRIDE:Q9SR92PRO:PR:Q9SR92PROSITE:PS50206ProteinModelPortal:Q9SR92Proteomes:UP000006548
RefSeq:NP_566337.1SMART:SM00450STRING:3702.AT3G08920.1SUPFAM:SSF52821TAIR:AT3G08920UniGene:At.43722UniProt:Q9SR92
Coordinates (TAIR10) chr3:+:2712274..2713117
Molecular Weight (calculated) 23781.20 Da
IEP (calculated) 9.82
GRAVY (calculated) 0.04
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVLLPQLNH IHKLPVVLNR RLRQSYRLPV ISAVSGKELI LSGKVRAVEP KEANAVVASE GYILLDVRPA WEREKARVKG SLHVPLFVED PDNGPITLLK
101: KWIHLGYIGL WTGQRFTMIN DEFALRVVEA VPDKESKVLV VCGEGLRSLA AVSKLHGEGY KSLGWLTGGF NRVSEGDFPE IEGTEELRFA TIGGVSFYLL
201: KLLVLLPSFG QKSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)