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AT3G08900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.841
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22318864 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : reversibly glycosylated polypeptide 3
Curator
Summary (TAIR10)
Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.
Computational
Description (TAIR10)
reversibly glycosylated polypeptide 3 (RGP3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: cellulose biosynthetic process, cellular cell wall organization; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, sepal, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 259 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EC:5.4.99.30eggNOG:ENOG410IHTPeggNOG:ENOG411144TEMBL:KJ138834EnsemblPlants:AT3G08900EnsemblPlants:AT3G08900.1entrez:820039
ExpressionAtlas:W8Q6U1GeneID:820039GO:GO:0016740GO:GO:0016866GO:GO:0030244GO:GO:0033356Gramene:AT3G08900.1
hmmpanther:PTHR31682hmmpanther:PTHR31682:SF5InterPro:IPR004901InterPro:IPR029044KEGG:ath:AT3G08900KO:K13379OMA:WQEEAIP
PaxDb:W8Q6U1Pfam:O22666Pfam:PF03214PhylomeDB:W8Q6U1PIRSF:PIRSF016429PRIDE:O22666RefSeq:NP_187502.2
STRING:3702.AT3G08900.1SUPFAM:SSF53448tair10-symbols:RGPtair10-symbols:RGP3UniGene:At.19826UniProt:O22666UniProt:W8Q6U1
Coordinates (TAIR10) chr3:-:2708347..2709714
Molecular Weight (calculated) 41283.70 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.21
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)