suba logo
AT3G08860.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PYRIMIDINE 4
Curator
Summary (TAIR10)
Encodes a protein that is predicted to have beta-alanine aminotransferase activity.
Computational
Description (TAIR10)
PYRIMIDINE 4 (PYD4); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; INVOLVED IN: cellular response to nitrogen levels; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine:glyoxylate aminotransferase 3 (TAIR:AT2G38400.1); Has 35951 Blast hits to 35930 proteins in 2736 species: Archae - 736; Bacteria - 23081; Metazoa - 661; Fungi - 840; Plants - 399; Viruses - 17; Other Eukaryotes - 10217 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G08860-MONOMEREC:2.6.1.44eggNOG:COG0160eggNOG:KOG1404EMBL:AC010871EMBL:AY099816EMBL:CP002686
EnsemblPlants:AT3G08860EnsemblPlants:AT3G08860.1entrez:820034ExpressionAtlas:Q0WWF1ExpressionAtlas:Q9SR86Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:820034Genevisible:Q9SR86GO:GO:0005739GO:GO:0008453GO:GO:0009853GO:GO:0030170GO:GO:0042802
GO:GO:0043562Gramene:AT3G08860.1gramene_pathway:2.6.1.18gramene_pathway:PWY-3941hmmpanther:PTHR11986hmmpanther:PTHR11986:SF66HOGENOM:HOG000020206
InParanoid:Q9SR86InterPro:IPR005814InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:ath:AT3G08860KO:K00827
OMA:HVMNHMKPANTHER:PTHR11986PaxDb:Q9SR86Pfam:PF00202Pfam:Q9SR86PhylomeDB:Q9SR86PRIDE:Q9SR86
PRO:PR:Q9SR86PROSITE:PS00600ProteinModelPortal:Q9SR86Proteomes:UP000006548Reactome:R-ATH-389661RefSeq:NP_187498.1scanprosite:PS00600
SMR:Q9SR86STRING:3702.AT3G08860.1SUPFAM:SSF53383TAIR:AT3G08860tair10-symbols:PYD4UniGene:At.19925UniProt:Q0WWF1
UniProt:Q9SR86
Coordinates (TAIR10) chr3:-:2696754..2699087
Molecular Weight (calculated) 52464.20 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.10
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)