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AT3G08650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.932
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ZIP metal ion transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 4142 Blast hits to 3425 proteins in 1059 species: Archae - 130; Bacteria - 2604; Metazoa - 766; Fungi - 8; Plants - 161; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G08650EnsemblPlants:AT3G08650.1entrez:820012hmmpanther:PTHR11040hmmpanther:PTHR11040:SF70Pfam:PF02535TMHMM:TMhelix
Coordinates (TAIR10) chr3:-:2624694..2626879
Molecular Weight (calculated) 61927.40 Da
IEP (calculated) 7.55
GRAVY (calculated) 0.72
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MMHSSCKGLV LLLFLFVVVF IGNTDANAQW EVSHKVRASP HENMGRNVID GSGVEKTLHD IGMGEKRGTH NKVSVSTVAL FTLAMAAATG LGAVPFFFVE
101: LDPQWAGICN GMAAGVMLAA SFDLVKEGQE HGSGNWVVTG ILAGALFIWL CKQILEQYGE VSMLDIKGAD ATKVVLVIGI MTLHSFGEGS GVGVSFAGSK
201: GFSQGLLVTL AIAVHNIPEG LAVSMVLASR GVSPQNAMLW SIITSLPQPL VAVPAFLCAD AFSKFLPFCT GFAAGCMIWM VIAEVLPDAF KEASPSQVAS
301: AATISVASME ALSTLFESFT HDYNSEDASG FFVSLLFGLG PLLGGVFLVA SAVTFRLQHA LLMGVASGIA FVLGLWRPLQ LLLSAKMGLI PLVSLLAIGA
401: GLSHFTSSTI LNVTGRKKSR AGSLINPVTN FPTSVITLQS LLACGAVGFH ALAEGLALGV AAPNAYGLGR HMVLPVSLHG LPRGTAVASC VFGATDSWHA
501: ALAAAALIGF VGPISAIGSI LAGIDYSGLD HVMVVACGGL LPSFWQVIKR AVRLERRKGS VGMVLGLACA VVCLTFTRLV CLHTPYCNSA PEAVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)