AT3G08630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3411) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT3G08640.1); Has 4366 Blast hits to 2077 proteins in 248 species: Archae - 0; Bacteria - 513; Metazoa - 2417; Fungi - 136; Plants - 874; Viruses - 19; Other Eukaryotes - 407 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2620943..2621962 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35952.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMAAKLHI STKSDQSNVR LPRLINLSRD PTARVLFPRN GSVSSLHTNF SSPNIMVPCA GGGGGGSIGN HGGGSGSGGG GGGYGGSEEE ESSPWGPLGL 101: FIQGWRSRVA ADSQFPFKVL MEMLVGVSAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AISHGSSNLL PGIFRSCPSS HMFEQGNFTL 201: MNRFGTLVYK GMVFATVGLA AGLVGTAISN GLIMLRKKID PSFETPNKPP PTLLNSLTWA THMGVSANVR YQTLNGAEFL LEKSLPPLVF KTSVIALRVV 301: NNVLGGMSFV TLARMTGSQS VEEEKKIEMS EISEKEKED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)