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AT3G08600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1191)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G22900.1); Has 124 Blast hits to 124 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ5KeggNOG:ENOG4111YT8EMBL:AC012562EMBL:AY045678EMBL:AY056087EMBL:CP002686EnsemblPlants:AT3G08600
EnsemblPlants:AT3G08600.1entrez:820007GeneID:820007GO:GO:0005886GO:GO:0016021Gramene:AT3G08600.1hmmpanther:PTHR33512
hmmpanther:PTHR33512:SF1InterPro:IPR010605KEGG:ath:AT3G08600OMA:YNATQLPPfam:PF06697PhylomeDB:Q9C9Z6Proteomes:UP000006548
RefSeq:NP_566329.1STRING:3702.AT3G08600.1SwissPalm:Q9C9Z6TAIR:AT3G08600TMHMM:TMhelixUniGene:At.17611UniProt:Q9C9Z6
Coordinates (TAIR10) chr3:+:2612646..2613596
Molecular Weight (calculated) 34734.10 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.09
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLRCLQLL LLLFLSLRLQ KLSAQSSSPN ASSSSSLDAL LQDYSFRALL RPRTGILYEA TTVPSNLTGI KLAAMRLRSG SFRKRGVTPF NEFSIPSGVI
101: VKPYVTRLVL VYQNLANFSH LYYPLSGYDY VAPVLGLLAY DAKNLSALNL PQLDLRVSND PIRIDFSDLE RIPQGSSAKC VRFDSKGEAS FSDSIQPGNT
201: CETEHQGHFS VVVKSVASAP SLAPPGIESK KKKKSSDSNS KTWIIVGSVV GGLILLGLLL FLVLRCRNYK KQEKMREMER AGETGEALRM TQVGETRAPT
301: ATTTRTQPML ETEYAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)