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AT3G08570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08660.1); Has 979 Blast hits to 951 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 880; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHXZeggNOG:ENOG410XRIYEMBL:AC012562EMBL:CP002686EnsemblPlants:AT3G08570EnsemblPlants:AT3G08570.1entrez:820004
GeneID:820004Genevisible:Q9C9Z7GO:GO:0016567Gramene:AT3G08570.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF5HOGENOM:HOG000239180
InParanoid:Q9C9Z7InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356KEGG:ath:AT3G08570ncoils:CoilOMA:ARCGKIR
PaxDb:Q9C9Z7Pfam:PF00651Pfam:PF03000Pfam:Q9C9Z7Pfscan:PS50097Pfscan:PS51649PRO:PR:Q9C9Z7
PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9C9Z7Proteomes:UP000006548RefSeq:NP_187469.4SMART:SM00225STRING:3702.AT3G08570.1
SUPFAM:SSF54695TAIR:AT3G08570UniGene:At.66513UniPathway:UPA00143UniProt:Q9C9Z7
Coordinates (TAIR10) chr3:-:2602258..2604412
Molecular Weight (calculated) 69399.50 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.26
Length 617 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIISDNAQS HSSSSAPAPS IFSSSFATRI FSDVAGDITI VVDGESFLLH KFPLVARCGK IRKMVAEMKE SSSNLSHTEL RDFPGGSKTF ELAMKFCYGI
101: NFEITISNVV AIRCAAGYLE MTEDFKEENL IARTETYLEQ VAFRSLEKSV EVLCSCETLY PQDIAETAHI PDRCVEAIAV NACREQLVLG LSRLNRGTES
201: GELKRGDSPE WWIEDLSALR IDYYARVVSA MARTGLRSES IITSLMHYAQ ESLKGIRNCK ERTKLDSGTF ENEQRNVLEA IVSLFPNDNV PLSFLFGMLR
301: VGITINVAIS CRLELERRIA QQLETVSLDD LLIPVVRDGD SMYDVDTVHR ILVCFLKKIE EEEEYDEDCC YENETENLTG SMCHSSLLKV GRIMDAYLAE
401: IAPDPCLSLH KFMALIEILP DYARVMDDGL YRAIDMFLKG HPSLNEQECK SLCKFIDTQK LSQEACNHVA QNDRLPMQMV VRVLYSEQLR MKNVMSGESG
501: EGLLLSSQKH SSENPSRAVS PRDTYASLRR ENRELKLEIS RVRVRLTELE KEQILMKQGM MEKSGHGGTL LTSLSKGIGR ISIFGGGPTE GKLRNANRKS
601: KSRLERKTVR SRPESMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)