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AT3G08030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25805245 (2015): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:22923678 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF642
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT2G41800.1); Has 380 Blast hits to 353 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGBReggNOG:ENOG410YEA0EMBL:AC013483EMBL:AY072318EMBL:AY086764EMBL:BT000740EMBL:BT002544
EMBL:CP002686EnsemblPlants:AT3G08030EnsemblPlants:AT3G08030.1entrez:819994ExpressionAtlas:Q9SFB1GeneID:819994GO:GO:0005618
GO:GO:0005886Gramene:AT3G08030.1hmmpanther:PTHR31265hmmpanther:PTHR31265:SF2HOGENOM:HOG000231422InterPro:IPR006946KEGG:ath:AT3G08030
OMA:GASADTWPfam:PF04862PhylomeDB:Q9SFB1Proteomes:UP000006548RefSeq:NP_566328.1STRING:3702.AT3G08030.1TAIR:AT3G08030
TMHMM:TMhelixUniGene:At.21652UniGene:At.67126UniProt:Q9SFB1
Coordinates (TAIR10) chr3:+:2564191..2565819
Molecular Weight (calculated) 39068.00 Da
IEP (calculated) 7.64
GRAVY (calculated) 0.03
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)