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AT3G08020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1); Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0; Bacteria - 13; Metazoa - 2009; Fungi - 82; Plants - 239; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2479-MONOMEReggNOG:ENOG410ITPKeggNOG:ENOG410XS5ZEMBL:AK229897EMBL:AK230450EMBL:CP002686EnsemblPlants:AT3G08020
EnsemblPlants:AT3G08020.1entrez:819993Gene3D:3.30.40.10GeneID:819993GO:GO:0008270Gramene:AT3G08020.1hmmpanther:PTHR10615
HOGENOM:HOG000085090InterPro:IPR001841InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
KEGG:ath:AT3G08020OMA:VAGICSTPfscan:PS50016Pfscan:PS50089PhylomeDB:Q0WKW1PROSITE:PS01359PROSITE:PS50016
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_187459.2scanprosite:PS01359SMART:SM00249SMR:Q0WKW1SUPFAM:SSF57903
TAIR:AT3G08020UniGene:At.28103UniGene:At.40267UniProt:Q0WKW1
Coordinates (TAIR10) chr3:-:2557753..2561534
Molecular Weight (calculated) 86276.20 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.65
Length 779 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFHVACPIT CRRICHCSLG FSRDLRGANA KHKFLKEVIR VEEFLKDPAV SSNVFIGGTV QVRVPKVVPA PQTVSILGVG DGAIGSGVDE LAEEASAQKK
101: RVALQRQAAV TVEAAEDYAR RFESGVNDLT SNDHAGEELG HSGMNIMCRM CFLGEGEGSD RARRMLSCKD CGKKYHKNCL KSWAQHRDLF HWSSWSCPSC
201: RVCEVCRRTG DPNKFMFCKR CDAAYHCYCQ HPPHKNVSSG PYLCPKHTRC HSCDSTVPGN GLSVRWFLSY TCCDACGRLF VKGNYCPVCL KVYRDSESTP
301: MVCCDICQRW VHCHCDGISD DKYMQFQVDG KLQYKCATCR GECYQVKDLQ DAVQELWKKK DVVDKELIAS LRAAAGLPTE EEIFSIFPFS DDEENGPVSG
401: RSLKFSIKGL VEKSPKKSKE YGKHSSSKKH ASKKGSHTKL EPEVHQEIGS ERRRLGGVRI DNVGFQINEQ SDVNSSVAGI CSTHEPKIVK HKRVDDVMVT
501: DEEKPSRIVR IKCSKPHDSD SEDTLRNAGE EKSVKAKKLV INLGARKINV SGSSKSNVVS HLSRDKDQST LGGDKVDQTG EVRTLKISGR FGKTQSEGSK
601: ATFGSVTQFP AASTSEGNHV DDKTSISPAL QKEARPLLKF KLRKPNSGDQ TSSVTTQSED EKLSSAKGQR SKRKRPSSLV DMASLKEDGE ATTHSHQDNS
701: RNDEMMDANW ILKKLGKDSI GKRVEVHGSQ NSWRKGTVTD VSGDTSTLSV SLDDGSIKTF ELGKHSVRFI PQKQKRSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)