suba logo
AT3G08010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA binding
Curator
Summary (TAIR10)
Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.
Computational
Description (TAIR10)
ATAB2; FUNCTIONS IN: RNA binding; INVOLVED IN: de-etiolation, chloroplast organization, translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1092 (InterPro:IPR009472); Has 382 Blast hits to 382 proteins in 92 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIT6eggNOG:ENOG410YDC7EMBL:AC013483EMBL:AY072316
EMBL:BT001168EMBL:CP002686EnsemblPlants:AT3G08010EnsemblPlants:AT3G08010.1
entrez:819992GeneID:819992GO:GO:0003723GO:GO:0006412
GO:GO:0009507GO:GO:0009658GO:GO:0009704Gramene:AT3G08010.1
hmmpanther:PTHR34556hmmpanther:PTHR34556:SF2HOGENOM:HOG000232651InterPro:IPR009472
KEGG:ath:AT3G08010OMA:WELDFYSPfam:PF06485PhylomeDB:Q9SFB3
Proteomes:UP000006548RefSeq:NP_566327.1STRING:3702.AT3G08010.1TAIR:AT3G08010
tair10-symbols:ATAB2UniGene:At.28103UniGene:At.40267UniProt:Q9SFB3
Coordinates (TAIR10) chr3:+:2556046..2557426
Molecular Weight (calculated) 41919.20 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.15
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLGFNTRR IQTPSLPRIP KPSSFTKPIK THHLFSSETL LKRCRFVSRS LPESSLSITK EQEVANEVEE DDPTSELSYL DPESDADSIK EWELDFCSRP
101: ILDSRGKKIW ELVVCDASLS LQVTKYFPNN VINSITLKDA IVTITQDLGV PLPEKIRFFR SQMQTIITKA CKELAIKAVP SKRCLSLFLW LQERYDTVYT
201: RHPGFQKGSL PLLSLDNPFP MNLPENLFGE KWAFVQLPYS AVREEISDFD EKFVFGASLD LDLLGIEVDE NTLIPGLSVA TSRAKPLAAW MNGLEVCSIE
301: ADSSKGCLIL SVGIATRYVY ATYKKTPVTT DEAEAWESAK KTSGGLHFLA IQDDLDSDDC VGFWLLIDLP PPPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)