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AT3G07950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rhomboid protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
rhomboid protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1751, integral membrane, eukaryotic (InterPro:IPR013861); Has 573 Blast hits to 573 proteins in 252 species: Archae - 14; Bacteria - 156; Metazoa - 119; Fungi - 151; Plants - 78; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQM0eggNOG:KOG2890EMBL:AC013483EMBL:AK221782EMBL:AY085112EMBL:BT002055EMBL:BT008814
EMBL:CP002686EnsemblPlants:AT3G07950EnsemblPlants:AT3G07950.1entrez:819986Gene3D:1.20.1540.10GeneID:819986Genevisible:Q8LF05
GO:GO:0004252GO:GO:0005794GO:GO:0006890GO:GO:0016021Gramene:AT3G07950.1hmmpanther:PTHR13377hmmpanther:PTHR13377:SF4
HOGENOM:HOG000240593InParanoid:Q8LF05IntAct:Q8LF05InterPro:IPR013861InterPro:IPR022764KEGG:ath:AT3G07950OMA:LCGRSER
PaxDb:Q8LF05Pfam:PF08551PhylomeDB:Q8LF05PRIDE:Q8LF05PRO:PR:Q8LF05ProteinModelPortal:Q8LF05Proteomes:UP000006548
Reactome:R-ATH-6807878RefSeq:NP_566326.1STRING:3702.AT3G07950.1SUPFAM:SSF144091TAIR:AT3G07950TMHMM:TMhelixUniGene:At.27668
UniProt:Q8LF05
Coordinates (TAIR10) chr3:+:2531982..2534277
Molecular Weight (calculated) 34085.80 Da
IEP (calculated) 8.04
GRAVY (calculated) 0.39
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)