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AT3G07900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.788
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G44500.1); Has 833 Blast hits to 829 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV7TeggNOG:ENOG410XXT2EMBL:AC013483EMBL:CP002686
EnsemblPlants:AT3G07900EnsemblPlants:AT3G07900.1entrez:819981GeneID:819981
GO:GO:0009507GO:GO:0016021GO:GO:0016757Gramene:AT3G07900.1
hmmpanther:PTHR31741hmmpanther:PTHR31741:SF13HOGENOM:HOG000005962InterPro:IPR019378
InterPro:IPR024709KEGG:00514+2.4.1.221KEGG:ath:AT3G07900OMA:AKRASIM
Pfam:PF10250PhylomeDB:Q9SFC4PIRSF:PIRSF009360Proteomes:UP000006548
RefSeq:NP_187447.1TAIR:AT3G07900TMHMM:TMhelixUniGene:At.66566
unipathway:UPA00378UniProt:Q9SFC4
Coordinates (TAIR10) chr3:+:2520826..2523008
Molecular Weight (calculated) 65367.30 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.38
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTWKNKNSN KKNRVSYISV PAQIINSVSS SSLHKFLDNK SSKKNTSKFF FNLRNPKLWA FSLFLLSILG ISLRLGLCLS HFGSGDHESQ LQSSDSNGSP
101: KSHMGFAYIR SSTTQVEISN AKDRSLDMGV EKNETFGGHQ SHLIIPNGNG HDDKNYDFWK QPDGLGYKPC LDFSIEYRRE SKKILVERRK YLMVVVSGGL
201: NQQKIQIVDA VVIARILGAV LVVPILQINL IWGDESEFSD IFDLEQFKSV LANDVKIVSL LPASKVMTRP SEDGSMPFNA SPQWIRSHYP KRFNREGVLL
301: LRRLDSRLSK DLPSDLQKLR CKVAFEALKF SPRVMEMGTK LAERMRSKGP YIALHLRMEK DVWVRTGCLS GLSSKYDEIV NIERIKRPEL LTAKSSMTSN
401: ERKLAGLCPL NAKEVTRLLR ALGAPRDARI YWAGGEPLGG KEALKPLTSE FPHLYNKYDI ALPLELKPFA KRASIMAAID YIVCKESDVF MASHGGNMGH
501: AIQGHRAYEG HKKIITPNKR HMLPYFVNSS LTETEFEKMI KKLHRQSLGQ PELRISKAGR DVTKYPVPEC MCNQSNTTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)