AT3G07790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DGCR14-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DGCR14-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear protein DGCR14 (InterPro:IPR019148); Has 334 Blast hits to 326 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 84; Plants - 40; Viruses - 21; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2487491..2489017 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56814.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||
| Length | 508 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLSPGHSPR QISSPSPSSY SDDTLRSTPR SSSSEIIPRN PRKRMRVLDE DAYVEAIEKI IERDYFPDIT KLRDRLDWIQ AVKTRDPIQI RDAQLKIIER 101: RGKKANHHVG DTEGKTQTPG STFLRNFTPL DEFDGKTPRT PGVSGREFHG VEVDAGDGDE DIDLNLSLDE FFRRYTSEDN ESFSKILEKV NRKKKEKYGF 201: LLEGEKEDGK SIEDVKRDRI TDGYGTSDQP PSTLEGWKYT AKNLLMYHPA DRGEAPLTEA ERAVRLLGLT KEIVKGNTRF HGKTMDSRPR EDGSVEILYT 301: PIAGSSPMHI SGRDRDKSKR YDLDDLRKTP NPFYVESDKR ADNGYSFVRT PSPAPGLDES PFITWGEIDG TPMRLDLEDT PIDIGGSADG PHYNIPSAPP 401: RDVRAHSLSR DASRKLRERS NSMFKKPPLP SPHRSGSASP NVRTLSPAAQ KFFRKAIAKS SSTVDESLRA SYRGASPRGA SPGAVTPKSV RSISRFGKDG 501: TSSETRSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)