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AT3G07750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.718
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3'-5'-exoribonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1493 Blast hits to 1491 proteins in 343 species: Archae - 294; Bacteria - 54; Metazoa - 354; Fungi - 315; Plants - 185; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1271-MONOMERBioCyc:ARA:GQT-1613-MONOMEReggNOG:COG2123eggNOG:KOG1612EMBL:AF325018EMBL:AK119005EMBL:BT020424
EMBL:CP002686EnsemblPlants:AT3G07750EnsemblPlants:AT3G07750.1EnsemblPlants:AT3G07750.2entrez:819966Gene3D:3.30.230.70GeneID:819966
Gramene:AT3G07750.1Gramene:AT3G07750.2hmmpanther:PTHR11097hmmpanther:PTHR11097:SF8IntAct:Q9FPI0InterPro:IPR001247InterPro:IPR015847
InterPro:IPR020568InterPro:IPR027408KEGG:ath:AT3G07750KO:K12589OMA:VTVCKIGPfam:PF01138Pfam:PF03725
PhylomeDB:Q9FPI0Proteomes:UP000006548Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_566318.1RefSeq:NP_850537.1SMR:Q9FPI0
STRING:3702.AT3G07750.1SUPFAM:SSF54211SUPFAM:SSF55666TAIR:AT3G07750UniGene:At.18345UniProt:Q9FPI0
Coordinates (TAIR10) chr3:+:2473486..2475218
Molecular Weight (calculated) 29963.60 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.00
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSLGEQHF IKGGIAQDLR TDGRKRLTYR PIYVETGVIP QANGSARVRI GGTDVIASVK AEIGRPSSLQ PDKGKVAVFI DCSPTAEPTF GGRGGEELSS
101: ELALALQRCL LGGKSGAGAG INLSSLLIKE GKVCWDLYID GLVISSDGNL LDALGAAIKA ALTNTAIPKV NVSAEVADDE QPEIDISDEE YLQFDTSSVP
201: VIVTLTKVGT HYIVDATAEE ESQMSSAVSI SVNRTGHICG LTKRSGSGLD PSVILDMISV AKHVTETLMS KLDSEISAAE ACEDES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)