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AT3G07700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 10121 Blast hits to 10057 proteins in 1795 species: Archae - 124; Bacteria - 4381; Metazoa - 447; Fungi - 487; Plants - 723; Viruses - 14; Other Eukaryotes - 3945 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1937-MONOMERBioCyc:ARA:GQT-1938-MONOMEReggNOG:COG0661eggNOG:KOG1235EMBL:AK317324EMBL:CP002686EnsemblPlants:AT3G07700
EnsemblPlants:AT3G07700.1EnsemblPlants:AT3G07700.2entrez:819961ExpressionAtlas:B9DGY1GeneID:819961GO:GO:0016021GO:GO:0016301
Gramene:AT3G07700.1Gramene:AT3G07700.2hmmpanther:PTHR10566hmmpanther:PTHR10566:SF50HOGENOM:HOG000232481InterPro:IPR004147InterPro:IPR011009
Pfam:PF03109PhylomeDB:B9DGY1Proteomes:UP000006548RefSeq:NP_566315.1RefSeq:NP_850536.1SMR:B9DGY1STRING:3702.AT3G07700.3
SUPFAM:SSF56112TAIR:AT3G07700TMHMM:TMhelixUniGene:At.18340UniGene:At.40313UniProt:B9DGY1
Coordinates (TAIR10) chr3:-:2459696..2463241
Molecular Weight (calculated) 78283.10 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.22
Length 695 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALLASQSC CYGGETARVT KAIGFSSSLE NHFTGEATQC YGSKSKRFRI EMRQSELPSK VGINGRSVKM VPASEVVKRK DGVNGSAGKG VNGASLVSSR
101: NINGAASTLV KAPKKTTESY LPPPVEGVRV LPSDEGFSWA DENYSSLQRS IDVWSFVISL RIRILFDNSK WAYVGGFTEE KQKSRRRETA SWLRESVLQL
201: GPTFIKLGQL SSTRSDLFPR EFVDELSKLQ DRVPAFSPEK AKRFIEAELG APISVMYKEF EEQPIAAASL GQVHRAVLHN GEKVVVKVQR PGLKKLFDID
301: LRNLKLIAEY FQKSESFGTN DWVGIYEECA LILYQEIDYI NEAKNADRFR RDFRNINWVR VPLVYWDYSA MKVLTLEYVP GVKINNLDAL AARGFNRSRI
401: ASRAIEAYLI QILKTGFFHA DPHPGNLAID VDESIIYYDF GMMGEIKTFT RKRLLDLFYS VYEKDAKKVM QNLIDLEALQ PTGDLSSVRR SVQFFLDNLL
501: SQSPDQQQTL AAIGEDLFAI SQDQPFRFPS TFTFVIRAFS TLEGIGYILD PEFSFVKVAA PYAQELLDLK QRQRSGTQLV QEIRKQADDA RSSTLSMPYR
601: VQRIEEFVKE LDSGDLKLRV RVLESERAAR KATILQMATM YTVLGGTLLN IGVTFSNQGS QLVANGSFIG AGIFMLLVLR SMQRVNKLDK FEKMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)