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AT3G07650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CONSTANS-like 9
Curator
Summary (TAIR10)
This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
Computational
Description (TAIR10)
CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 3101 Blast hits to 2272 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 3022; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQ3eggNOG:ENOG410YA5CEMBL:AC009176EMBL:AY049290EMBL:CP002686EnsemblPlants:AT3G07650EnsemblPlants:AT3G07650.1
EnsemblPlants:AT3G07650.2EnsemblPlants:AT3G07650.3EnsemblPlants:AT3G07650.4entrez:819956ExpressionAtlas:Q9SSE5GeneID:819956Genevisible:Q9SSE5
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0007623GO:GO:0008270GO:GO:0048579Gramene:AT3G07650.1
Gramene:AT3G07650.2Gramene:AT3G07650.3Gramene:AT3G07650.4hmmpanther:PTHR31717hmmpanther:PTHR31717:SF8HOGENOM:HOG000116529InParanoid:Q9SSE5
InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT3G07650OMA:MMSINDNPaxDb:Q9SSE5Pfam:PF00643Pfam:PF06203
Pfam:Q9SSE5Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q9SSE5PRIDE:Q9SSE5PRO:PR:Q9SSE5PROSITE:PS50119
PROSITE:PS51017ProteinModelPortal:Q9SSE5Proteomes:UP000006548RefSeq:NP_001030659.1RefSeq:NP_001118599.1RefSeq:NP_187422.1RefSeq:NP_974250.1
SMART:SM00336STRING:3702.AT3G07650.1TAIR:AT3G07650tair10-symbols:COL9UniGene:At.18337UniProt:A1A6H1UniProt:Q9SSE5
Coordinates (TAIR10) chr3:+:2442494..2443901
Molecular Weight (calculated) 40756.10 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.68
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)