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AT3G07640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXBDeggNOG:ENOG410YQBEEMBL:AK229559EMBL:AY088787EMBL:BT025788EMBL:CP002686EnsemblPlants:AT3G07640
EnsemblPlants:AT3G07640.1entrez:819955GeneID:819955Gramene:AT3G07640.1hmmpanther:PTHR37221HOGENOM:HOG000006198KEGG:ath:AT3G07640
OMA:VPFITRSPhylomeDB:Q8L8V4Proteomes:UP000006548RefSeq:NP_566314.1STRING:3702.AT3G07640.1TAIR:AT3G07640UniGene:At.40319
UniProt:Q8L8V4
Coordinates (TAIR10) chr3:+:2438171..2439661
Molecular Weight (calculated) 27029.40 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.17
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVAEKIVFL WNDSDGFAAT ISDTLNPSPS SPLRKLEEQI QLPLDKYGVE GVETGGSIVH FVDENEVYQV SIFLLRSYEP PVLVCAMNEL LDLITRGSST
101: LPTIIAPFFV AASKLKFNNR SLEANNRKAS LHYVQVATET ETSRLFASRI EKPPLSMQIH YEPLSCLLHL ARVKRLPTAI LIGQRSNSLT HKALDEELQV
201: IHETGELVAS WTGLSFSRDR IKWSASKTSK EEESPWRALY G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)