AT3G07600.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.820 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Heavy metal transport/detoxification superfamily protein | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G48290.1); Has 932 Blast hits to 701 proteins in 113 species: Archae - 0; Bacteria - 150; Metazoa - 39; Fungi - 24; Plants - 521; Viruses - 17; Other Eukaryotes - 181 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:2424300..2424954 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 17936.50 Da | ||||||||||||||||||||||||
IEP (calculated) | 7.25 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
Length | 157 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKQKILIRIA MTDDTTRAKA MKTAVQFKGV NAVEIKGDHR NQIEVTGVEV DMIALINTLR KKVAFAELVS VAKVEPPKDG DKKPEEEKKP EEKKPEEKKP 101: EEKKPEPCCQ PWQKPEPCYQ PWPHDGYGVP SSYPYPCDPY NQIGEPVYNQ DPNCRIM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)