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AT3G07540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Actin-binding FH2 (formin homology 2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT5G48360.1); Has 4151 Blast hits to 3580 proteins in 346 species: Archae - 0; Bacteria - 185; Metazoa - 1758; Fungi - 365; Plants - 898; Viruses - 103; Other Eukaryotes - 842 (source: NCBI BLink).
Protein Annotations
BioGrid:5278eggNOG:ENOG410XQR0eggNOG:KOG1922EMBL:AC009853
EMBL:AF446866EMBL:AY050396EMBL:CP002686EnsemblPlants:AT3G07540
EnsemblPlants:AT3G07540.1entrez:819943GeneID:819943Genevisible:Q9SRR2
GO:GO:0003779GO:GO:0005886GO:GO:0016021Gramene:AT3G07540.1
hmmpanther:PTHR23213hmmpanther:PTHR23213:SF220HOGENOM:HOG000239832InParanoid:Q9SRR2
InterPro:IPR015425iPTMnet:Q9SRR2KEGG:ath:AT3G07540ncoils:Coil
OMA:YARSSMYPaxDb:Q9SRR2Pfam:PF02181Pfam:Q9SRR2
Pfscan:PS51444PhylomeDB:Q9SRR2PRIDE:Q9SRR2PRO:PR:Q9SRR2
PROSITE:PS51444ProteinModelPortal:Q9SRR2Proteomes:UP000006548RefSeq:NP_566311.1
SMART:SM00498SMR:Q9SRR2STRING:3702.AT3G07540.1SUPFAM:SSF101447
TAIR:AT3G07540TMHMM:TMhelixUniGene:At.26581UniGene:At.74959
UniProt:Q9SRR2
Coordinates (TAIR10) chr3:-:2404763..2407464
Molecular Weight (calculated) 93016.40 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.40
Length 841 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGLCYVIFI IFSLLSCAFS PLSYASPATF SRRHLLQAPV TDPSTFSPPF FPLYSSTSPP PPPSPPQPLP PPAPTFATFP ANISALVLPR SPKPQTPSRT
101: LLIPAISAVL AAATLIALAF FFYGRWRGQT SHFKDESKSL ASDISQSQQQ TLPCPPPRNN NTQNKLSVAP STSDVLYLGN VVTSSGSGFV KPESPDISPL
201: PPLPARSFLL QHHSEANLDE EEEDDDFYSP LASIAGQESR DRRINPYSNC SCSISSHSDS PAMSPSAAMS PPMNSTAPHW STNQNTHSPS SPERTVRNNK
301: RYGGQSLRMF SLWNQNLGFP RISSASTSPE RGMIRTPDAY ARSSMYSSVS TTPDRFFRKV LDSSPPRWND FSRNVKSLFL SSTSASPARD FCINISESSR
401: SLKSSWEKPE LDTTQQRESA AAAVTLPPPQ RPPPAMPEPP PLVPPSQSFM VQKSGKKLSF SELPQSCGEG TTDRPKPKLK PLPWDKVRPS SRRTNTWDRL
501: PYNSSNANSK QRSLSCDLPM LNQESKVLDP RKSQNVAVLL TTLKLTTNDV CQALRDGHYD ALGVELLESL ARVAPSEEEE KKLISYSDDS VIKLAPSERF
601: LKELLNVPFV FKRVDALLSV ASFDSKVKHL KRSFSVIQAA CEALRNSRML LRLVGATLEA GMKSGNAHDF KLEALLGLVD IKSSDGRTSI LDSVVQKITE
701: SEGIKGLQVV RNLSSVLNDA KKSAELDYGV VRMNVSKLYE EVQKISEVLR LCEETGHSEE HQWWKFRESV TRFLETAAEE IKKIEREEGS TLFAVKKITE
801: YFHVDPAKEE AQLLKVFVIV RDFLKILEGV CKKMEVTSSL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)