AT3G07530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.940 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2400793..2404280 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77190.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELTCLSKGD GFHYPPCHML NLCGFRILID CPLDLSAIKI FSPVPSGVGS EASEYLSDES LDAQNPIQKK QKLERQLTCA DLVCEEPWYK TVKALHLWEA 101: SFIDIVLISN PMGLLGLPFL TQNPGFFAKI YMTEVTAKIG QLMMEDIVSM HKEFRCFHGP DNSSFPGWIK NLDSEQVPAL LKKVVFGESG DDLGSWMRLY 201: SLDDIESCMK KVQGVKFAEE VCYNGTLIIK ALSSGLDIGA CNWLINGPNG SLSYVSDSIF VSHHARSFDF HGLKETDVLI YSDFSSLQSA EVTEDGCISP 301: DSDNNYISTI SDNKDSLLNT EDSLEEMEKL AFVCSCAAES ADAGGSTLIT ITRIGIVLQL LELLSNSLES SSLKVPIFVI SSVAEELLAY TNTIPEWLCE 401: QRQEKLISGE PSFGHLKFIK NKKIHLFPAI HSPNLIYANR TSWQEPCIVF ASHWSLRLGP SVQLLQRWRG DPKSLLVLED GISSGLGLLP FRPIAMKILQ 501: CSFLSGIRLQ KLPTLVSVLQ PKIFLVPDAV NQRISLAAIK TISILNYFEN KTLHVPRIVD NPSVEITTDL ASKLSWRKLR QRESFGIARL KGGLLMEDGK 601: HRLVSGLEQE ESSGKARPLR HWGSVAPELL LDALLKMGIK GSIEQSTGDN GSEDKSIIHI ENPNSGLIEF SEMGTAIITG DENVVSQVFQ AIDGVLDGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)