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AT3G07480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g07480-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g07480-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2Fe-2S ferredoxin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1263 Blast hits to 1263 proteins in 213 species: Archae - 0; Bacteria - 293; Metazoa - 132; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IS88eggNOG:ENOG410XWV1EMBL:AC009853EMBL:AF386949EMBL:AY081513EMBL:AY086887EMBL:CP002686
EnsemblPlants:AT3G07480EnsemblPlants:AT3G07480.1entrez:819936Gene3D:3.10.20.30GeneID:819936GO:GO:0005739GO:GO:0009055
GO:GO:0009507GO:GO:0009735GO:GO:0051536Gramene:AT3G07480.1hmmpanther:PTHR23426hmmpanther:PTHR23426:SF30HOGENOM:HOG000243238
IntAct:Q9SRR8InterPro:IPR001041InterPro:IPR012675KEGG:ath:AT3G07480OMA:LENINACPhylomeDB:Q9SRR8Proteomes:UP000006548
RefSeq:NP_566309.1SMR:Q9SRR8STRING:3702.AT3G07480.1SUPFAM:SSF54292SwissPalm:Q9SRR8TAIR:AT3G07480UniGene:At.18424
UniGene:At.71515UniProt:Q9SRR8
Coordinates (TAIR10) chr3:+:2389026..2389505
Molecular Weight (calculated) 17603.20 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.27
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)