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AT3G07470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07460.1); Has 638 Blast hits to 638 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J284eggNOG:ENOG410YPP5EMBL:AY048203EMBL:BT002661
EMBL:CP002686EnsemblPlants:AT3G07470EnsemblPlants:AT3G07470.1entrez:819935
Gene3D:2.30.240.10GeneID:819935GO:GO:0005773Gramene:AT3G07470.1
hmmpanther:PTHR31676hmmpanther:PTHR31676:SF8HOGENOM:HOG000238027InterPro:IPR007493
KEGG:ath:AT3G07470OMA:HYDANITPfam:PF04398PhylomeDB:Q94AG1
Proteomes:UP000006548RefSeq:NP_566308.1SMR:Q94AG1STRING:3702.AT3G07470.1
SUPFAM:0051283SUPFAM:SSF141562TAIR:AT3G07470TMHMM:TMhelix
UniGene:At.18422UniProt:Q94AG1
Coordinates (TAIR10) chr3:-:2387291..2388343
Molecular Weight (calculated) 18779.80 Da
IEP (calculated) 4.93
GRAVY (calculated) 0.32
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLRIVQIAF LCLVLVAGIS ISTAISETET IYEILLANGL PSGIFPKGVR EFTFDVETGR FSVYLNQACE AKYETEIHYD ANITGTIGSA QISDLSGISA
101: QELFLWFPVK GIRVDVPSSG LIYFDVGVVR KQYSLSLFET PRDCVPVRGI HKVELPLYRV DQNLGRNII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)