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AT3G07430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YGGT family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YLMG1-1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleoid organization, chloroplast fission, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1); Has 784 Blast hits to 784 proteins in 294 species: Archae - 0; Bacteria - 502; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).
Protein Annotations
DNASU:819931eggNOG:COG0762eggNOG:ENOG410IX82EMBL:AC009853EMBL:AY088651EMBL:AY099847EMBL:BT006263
EMBL:CP002686EnsemblPlants:AT3G07430EnsemblPlants:AT3G07430.1entrez:819931GeneID:819931Genevisible:Q9SRS3GO:GO:0009507
GO:GO:0009535GO:GO:0009941GO:GO:0010020GO:GO:0016021GO:GO:0042651GO:GO:0090143Gramene:AT3G07430.1
hmmpanther:PTHR33219hmmpanther:PTHR33219:SF2InParanoid:Q9SRS3InterPro:IPR003425KEGG:ath:AT3G07430OMA:AYSAGPMPaxDb:Q9SRS3
Pfam:PF02325PhylomeDB:Q9SRS3PRIDE:Q9SRS3PRO:PR:Q9SRS3ProteinModelPortal:Q9SRS3Proteomes:UP000006548RefSeq:NP_566307.1
STRING:3702.AT3G07430.1TAIR:AT3G07430tair10-symbols:ATYLMG1-1tair10-symbols:emb1990tair10-symbols:YLMG1-1UniGene:At.28189UniProt:Q9SRS3
Coordinates (TAIR10) chr3:+:2379251..2379949
Molecular Weight (calculated) 24923.50 Da
IEP (calculated) 11.21
GRAVY (calculated) 0.36
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITALTLR SPVYLPSSAT SPRFHGFTNQ PPPARLFFPL NPFPSLSIQN PKSIRISASA SPITTPILQT EKSTARSSTL TGSTRSLATL AALAIAVTRV
101: LAQKLSLAIQ TSSPVIADGL RFSLSTAGPV FFASLRDRPP GYLNTPLTVV AVGIKKWLDI YSGVLMVRVL LSWFPNIPWE RQPLSAIRDL CDPYLNLFRN
201: IIPPIFDTLD VSPLLAFAVL GTLGSIVHGS TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)