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AT3G07320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G23770.1); Has 2806 Blast hits to 2728 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 2791; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07320-MONOMERCAZy:CBM43CAZy:GH17eggNOG:ENOG410IGWEeggNOG:ENOG410Y94BEMBL:AC009853EMBL:AK118068
EMBL:BT005678EMBL:CP002686EnsemblPlants:AT3G07320EnsemblPlants:AT3G07320.1entrez:819920Gene3D:3.20.20.80GeneID:819920
GO:GO:0004553GO:GO:0005975GO:GO:0009505GO:GO:0009506Gramene:AT3G07320.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF65
InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT3G07320OMA:DIRIWVAPfam:PF00332
Pfam:PF07983PhylomeDB:Q9SRT4PROSITE:PS00587Proteomes:UP000006548RefSeq:NP_683538.1scanprosite:PS00587SMART:SM00768
SMR:Q9SRT4STRING:3702.AT3G07320.1SUPFAM:SSF51445TAIR:AT3G07320UniGene:At.20334UniProt:Q9SRT4
Coordinates (TAIR10) chr3:-:2332324..2333925
Molecular Weight (calculated) 50606.60 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.14
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLLHLFAL SLLISVSGAK FSGRPGINYG QLGNNLPSPS DSVNLIKSLN AKRVKLYDAN PKILAALNGT DITVSVMVPN ELLVNISKSA SLSDDWIRSN
101: ILPFYPTTKI RYLLVGNEIL SLPDSELKSS LVPAMRKIQR SLKSLGVKKV KVGTTLATDV LQSSFPPSSG EFREDISGLI MKPMLQFLNR TKSFLFVDVY
201: PYFAWAQDPT HVDLDYAIFE STNVTVTDPV SNLTYHNLFD QMIDAFVFAM KRVGYPDIRI WVAETGWPNN GDYDQIGANI YNAATYNRNV VKKLAADPPV
301: GTPARPGKVL PAFVFALYNE NQKTGPGTER HFGLLHPNGT QVYGIDLSGK TEYKESLPAP ENNDLYKGKI WCVVAKGANW TQLGDALSYA CSQGNNTCDP
401: IQRGGPCQKP DLTVLHASYA FSSYWAQFRK IGGTCSFNGL ATQTIKDPSY GRCEFPSVTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)