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AT3G07300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NagB/RpiA/CoA transferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 4448 Blast hits to 4435 proteins in 1032 species: Archae - 365; Bacteria - 1744; Metazoa - 543; Fungi - 515; Plants - 227; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1184eggNOG:KOG1465EMBL:AC012395EMBL:AK317521EMBL:BT022056EMBL:CP002686EnsemblPlants:AT3G07300
EnsemblPlants:AT3G07300.1EnsemblPlants:AT3G07300.2entrez:819918ExpressionAtlas:Q9SFW0GeneID:819918GO:GO:0003743GO:GO:0016740
Gramene:AT3G07300.1Gramene:AT3G07300.2hmmpanther:PTHR10233hmmpanther:PTHR10233:SF9HOGENOM:HOG000208487InterPro:IPR000649KEGG:00270+5.3.1.23
KEGG:ath:AT3G07300KO:K03754Pfam:PF01008PhylomeDB:Q9SFW0Proteomes:UP000006548Reactome:R-ATH-72731RefSeq:NP_001030655.1
RefSeq:NP_187386.2SMR:Q9SFW0STRING:3702.AT3G07300.3SUPFAM:SSF100950TAIR:AT3G07300UniGene:At.40361unipathway:UPA00904
UniProt:Q9SFW0
Coordinates (TAIR10) chr3:-:2324967..2327380
Molecular Weight (calculated) 43601.40 Da
IEP (calculated) 5.73
GRAVY (calculated) 0.09
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)