suba logo
AT3G07200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G48655.3); Has 5779 Blast hits to 5761 proteins in 893 species: Archae - 0; Bacteria - 0; Metazoa - 3772; Fungi - 732; Plants - 578; Viruses - 31; Other Eukaryotes - 666 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XV78eggNOG:KOG0320EMBL:AC012395EMBL:CP002686EnsemblPlants:AT3G07200EnsemblPlants:AT3G07200.1EnsemblPlants:AT3G07200.2
entrez:819908Gene3D:3.30.40.10GeneID:819908GO:GO:0008270Gramene:AT3G07200.1Gramene:AT3G07200.2hmmpanther:PTHR23041
hmmpanther:PTHR23041:SF63InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907KEGG:ath:AT3G07200OMA:CPFTEEVPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9SFV0PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001078119.1RefSeq:NP_187376.1
scanprosite:PS00518SMART:SM00184SMR:Q9SFV0STRING:3702.AT3G07200.1SUPFAM:SSF57850TAIR:AT3G07200UniGene:At.40383
UniProt:Q9SFV0
Coordinates (TAIR10) chr3:+:2291343..2292223
Molecular Weight (calculated) 20091.10 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.54
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRVVRTSM RLRRRDGVTQ NEHQGDQQVA DQAPTVPQIV ATPPRINVVA IEDDDDVVES TASAFAQAKN KSRSARRGSQ VVDVESAGAN RSTRRRSDQT
101: SVDSVELNKP RKSKAVAPPV EEPKFSCPIC LCPFTQEVST KCGHIFCKKC IKNALSLQAK CPTCRKKITV KDLIRVFLPT TR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)