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AT3G07170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sterile alpha motif (SAM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G48680.1); Has 516 Blast hits to 515 proteins in 77 species: Archae - 0; Bacteria - 10; Metazoa - 341; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122EEeggNOG:KOG4374EMBL:AC012395EMBL:AF410300EMBL:AY142044EMBL:CP002686EnsemblPlants:AT3G07170
EnsemblPlants:AT3G07170.1entrez:819904Gene3D:1.10.150.50GeneID:819904Gramene:AT3G07170.1hmmpanther:PTHR23509hmmpanther:PTHR23509:SF1
HOGENOM:HOG000240855IntAct:Q9SFU7InterPro:IPR001660InterPro:IPR013761KEGG:ath:AT3G07170OMA:EAARPSMPfam:PF00536
Pfscan:PS50105PhylomeDB:Q9SFU7PROSITE:PS50105Proteomes:UP000006548RefSeq:NP_566300.1SMART:SM00454SMR:Q9SFU7
STRING:3702.AT3G07170.1SUPFAM:SSF47769TAIR:AT3G07170UniGene:At.27471UniGene:At.48625UniProt:Q9SFU7
Coordinates (TAIR10) chr3:+:2280428..2282097
Molecular Weight (calculated) 22683.80 Da
IEP (calculated) 10.39
GRAVY (calculated) -1.05
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MYADKLEAES GSRKVVKDRI NGGSGDISTR VRQVTGKRQR QDDKWEHDLF SSDKPQLSNR RVDPRDLRLK LQKRHHGSQS GREAGSGVRD LRDQLSGTMN
101: QQPKNSDPPK SKAEAARPSM KSVATETETR KTSSQATRKK SQQADSSVDS FLESLGLEKY STAFQVEEVD MDALMHMTDD DLKAMLIPMG PRKKILLALG
201: SKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)