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AT3G07160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucan synthase-like 10
Curator
Summary (TAIR10)
Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850).
Computational
Description (TAIR10)
glucan synthase-like 10 (GSL10); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: in 8 processes; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 8 (TAIR:AT2G36850.1); Has 1244 Blast hits to 899 proteins in 149 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 674; Plants - 491; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07160-MONOMERBioGrid:5238CAZy:GT48EC:2.4.1.34eggNOG:ENOG410XQ8VeggNOG:KOG0916EMBL:AC012395
EMBL:AY085106EMBL:CP002686EnsemblPlants:AT3G07160EnsemblPlants:AT3G07160.1entrez:819903GeneID:819903Genevisible:Q9SFU6
GO:GO:0000148GO:GO:0003843GO:GO:0006075GO:GO:0008360GO:GO:0016021GO:GO:0071555Gramene:AT3G07160.1
hmmpanther:PTHR12741hmmpanther:PTHR12741:SF12InParanoid:Q9SFU6InterPro:IPR003440InterPro:IPR026899iPTMnet:Q9SFU6KEGG:00500+2.4.1.34
KEGG:ath:AT3G07160KO:K11000ncoils:CoilOMA:DCKDSQEPaxDb:Q9SFU6Pfam:PF02364Pfam:PF14288
Pfam:Q9SFU6PRIDE:Q9SFU6PRO:PR:Q9SFU6ProteinModelPortal:Q9SFU6Proteomes:UP000006548RefSeq:NP_187372.5SMART:SM01205
STRING:3702.AT3G07160.1SwissPalm:Q9SFU6TAIR:AT3G07160tair10-symbols:ATGSL10tair10-symbols:CALS9tair10-symbols:gsl10TMHMM:TMhelix
UniGene:At.27504UniProt:Q9SFU6
Coordinates (TAIR10) chr3:-:2265142..2279383
Molecular Weight (calculated) 217099.00 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.03
Length 1890 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSRAESSWER LVNAALRRDR TGGVAGGNQS SIVGYVPSSL SNNRDIDAIL RAADEIQDED PNIARILCEH GYSLAQNLDP NSEGRGVLQF KTGLMSVIKQ
0101: KLAKREVGTI DRSQDILRLQ EFYRLYREKN NVDTLKEEEK QLRESGAFTD ELERKTVKRK RVFATLKVLG SVLEQLAKEI PEELKHVIDS DAAMSEDTIA
0201: YNIIPLDAPV TTNATTTFPE VQAAVAALKY FPGLPKLPPD FPIPATRTAD MLDFLHYIFG FQKDSVSNQR EHIVLLLANE QSRLNIPEET EPKLDDAAVR
0301: KVFLKSLENY IKWCDYLCIQ PAWSNLEAIN GDKKLLFLSL YFLIWGEAAN IRFLPECLCY IFHHMVREMD EILRQQVARP AESCMPVDSR GSDDGVSFLD
0401: HVIAPLYGVV SAEAFNNDNG RAPHSAWRNY DDFNEYFWSL HSFELGWPWR TSSSFFQKPI PRKKLKTGRA KHRGKTSFVE HRTFLHLYHS FHRLWIFLAM
0501: MFQALAIIAF NKDDLTSRKT LLQILSLGPT FVVMKFSESV LEVIMMYGAY STTRRLAVSR IFLRFIWFGL ASVFISFLYV KSLKAPNSDS PIVQLYLIVI
0601: AIYGGVQFFF SILMRIPTCH NIANKCDRWP VIRFFKWMRQ ERHYVGRGMY ERTSDFIKYL LFWLVVLSAK FSFAYFLQIK PLVGPTRMIV KQNNIPYSWH
0701: DFVSRKNYNA LTVASLWAPV VAIYLLDIHI FYTIFSAFLG FLLGARDRLG EIRSLEAIHK LFEEFPGAFM RALHVPLTNR TSDTSHQTVD KKNKVDAAHF
0801: APFWNQIIKS LREEDYITDF EMELLLMPKN SGRLELVQWP LFLLSSKILL AKEIAAESNS QEEILERIER DDYMKYAVEE VYHTLKLVLT ETLEAEGRLW
0901: VERIYEDIQT SLKERNIHHD FQLNKLSLVI TRVTALLGIL KENETPEHAK GAIKALQDLY DVMRLDILTF NMRGHYETWN LLTQAWNEGR LFTKLKWPKD
1001: PELKALVKRL YSLFTIKDSA AHVPRNLEAR RRLQFFTNSL FMDVPPPKSV RKMLSFSVFT PYYSEVVLYS MAELTKRNED GISILFYLQK IYPDEWKNFL
1101: ARIGRDENAL EGDLDNERDI LELRFWASYR GQTLARTVRG MMYYRKALML QSYLERKAGN DATDAEGFEL SPEARAQADL KFTYVVTCQI YGRQKEDQKP
1201: EAVDIALLMQ RNEALRIAYI DVVDSPKEGK SHTEYYSKLV KADISGKDKE IYSIKLPGDP KLGEGKPENQ NHAIVFTRGN AIQTIDMNQD NYFEEALKMR
1301: NLLEEFDRDH GIRPPTILGV REHVFTGSVS SLASFMSNQE TSFVTLGQRV LAKPLKIRMH YGHPDVFDRV FHITRGGISK ASRVINISED IFAGFNTTLR
1401: QGNVTHHEYI QVGKGRDVGL NQIALFEGKV AGGNGEQVLS RDVYRLGQLL DFFRMMSFFF TTVGFYLCTM LTVLTVYIFL YGRAYLALSG VGATIRERAI
1501: LLDDTALSAA LNAQFLFQIG VFTAVPMVLG FILEQGFLQA IVSFITMQFQ LCTVFFTFSL GTRTHYFGRT ILHGGARYQA TGRGFVVKHI KFSENYRLYS
1601: RSHFVKAMEV ILLLVVYLAY GNDEAGAVSY ILLTVSSWFL AVSWLFAPYL FNPAGFEWQK VVEDFKEWTN WLFYRGGIGV KGAESWEAWW EEELSHIRTL
1701: SGRIMETILS LRFFIFQYGI VYKLKLQGSD TSFAVYGWSW VAFAMIIVLF KVFTFSQKIS VNFQLLLRFI QGLSLLMALA GIIVAVVLTP LSVTDIFACV
1801: LAFIPTGWGI LSIACAWKPV LKRMGMWKSI RSLARLYDAL MGMLIFLPVA LCSWFPFVST FQTRMMFNQA FSRGLEISLI LAGDNPNSGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)