suba logo
AT3G07140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GPI transamidase component Gpi16 subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRR0eggNOG:KOG2407EMBL:AY050884EMBL:AY133829
EMBL:CP002686EnsemblPlants:AT3G07140EnsemblPlants:AT3G07140.1entrez:819900
ExpressionAtlas:Q949U5GeneID:819900GO:GO:0005783GO:GO:0016255
GO:GO:0042765Gramene:AT3G07140.1hmmpanther:PTHR12959hmmpanther:PTHR12959:SF11
HOGENOM:HOG000215945InterPro:IPR007245KEGG:ath:AT3G07140KO:K05292
OMA:GAEMWAWPANTHER:PTHR12959Pfam:PF04113PhylomeDB:Q949U5
Proteomes:UP000006548RefSeq:NP_566299.1STRING:3702.AT3G07140.1TAIR:AT3G07140
TMHMM:TMhelixUniGene:At.18713UniProt:Q949U5
Coordinates (TAIR10) chr3:+:2261278..2263632
Molecular Weight (calculated) 72170.50 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.16
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLRSLIL LLIVQSFLVA IAFGSKEVEE FSEALLLKPL PDRKVLAHFH FENRAPPSNS HGRHHHLFPK AISQLVQKFR VKEMELSFTQ GRWNHEHWGG
101: FDPLSSMNAK PVGVELWAVF DVPQSQVDTS WKNLTHALSG LFCASINFLE SSTSYAAPTW GFGPNSDKLR YGSLPREAVC TENLTPWLKL LPCRDKDGIS
201: ALMNRPSVYR GFYHSQRLHL STVESGQEGL GSGIVLEQTL TVVLQPETTS VESNMQPSWS LSSLFGRQVV GRCVLAKSSN VYLQLEGLLG YESKNVDTEI
301: EAHQLWKNAE FELSLKPERV IRESCSFLFI FDIDKSSDSE PFDLGLTWKR PSKWSCQQAP LHSSRFLMGS GNERGAIAIL LKATESQEKL SGRDLTNGQC
401: TIKANIFQIF PWYIKVYYHT LQIFVDQQQK TDSEVLKKIN VSPSTDKVSS GMMEMMLELP CEVKSVAISI EYDKGFLHID EYPPDANQGF DIPSALISFP
501: DHHASLDFQE ELSNSPLLSS LKEKSLVRSY TEVLLVPLTT PDFSMPYNVI TITCTIFALY FGSLLNVLRR RIGEEERFLK SQAGKKTGGL KQLLSRITAK
601: IRGRPIEAPS SSEAESSVLS SKLILKIILV AGAAAAWQYF STDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)