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AT3G07010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G48900.1); Has 1586 Blast hits to 1578 proteins in 262 species: Archae - 0; Bacteria - 663; Metazoa - 0; Fungi - 221; Plants - 695; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
CAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410JXRTEMBL:AK317552EnsemblPlants:AT3G07010EnsemblPlants:AT3G07010.1
entrez:819886ExpressionAtlas:B9DHJ9Gene3D:2.160.20.10GeneID:819886GO:GO:0030570GO:GO:0045490GO:GO:0046872
Gramene:AT3G07010.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF19InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082
KEGG:00040+4.2.2.2KEGG:ath:AT3G07010KO:K01728OMA:FFTHHNEPaxDb:B9DHJ9Pfam:PF00544Pfam:Q9M8Z8
PhylomeDB:B9DHJ9PRIDE:B9DHJ9PRINTS:PR00807ProteinModelPortal:B9DHJ9RefSeq:NP_187357.1SMART:SM00656SMR:B9DHJ9
STRING:3702.AT3G07010.1SUPFAM:SSF51126TAIR:AT3G07010UniGene:At.18756UniPathway:UPA00545UniProt:B9DHJ9UniProt:Q9M8Z8
Coordinates (TAIR10) chr3:-:2212973..2216306
Molecular Weight (calculated) 46176.80 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.26
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)