AT3G06990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G07000.1); Has 1311 Blast hits to 600 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1303; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2206387..2208058 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62111.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQPKQKVKI PCNHPLEYIQ LKGGGWPGSY DYDINTCAGC DEDYGFCYYC ASCSFRAHSE CIEWPDTIDH PSHSRHPLKK VSPGTIDYTD GKCHFCREEL 101: VDPMYHCSLC NFSVDVNCWR HPPQRTIYQP KSHEHTFTLM PRKITFTCNA CGMLDCIDLP RVININRHDH RISRTYHLGH GDWDLCGLCR KEIDWSFGAF 201: TCKRCPSYAV HSKCAVRKDV WDGEELEDVP EEEEEIEDPY KVINDKEIIH FSHEEHSLRL GGDDNVTGYE KMLCDACITP ISSDPFFKCV QCEFFLHKEC 301: ASLPRRKRSI LHIDKLDLRV KNKAGNHYKC RSCQKLFDGF RYKTTFDKFD VRCGSISEPF HHELHPHPLY HIFSPEEKSH ICGACDRPTQ YVLSCTVCEF 401: HLGMDCGTLP TKVKHTCDGH DLSLHHGAGN TDGPLWCDIC EEETDPSVWF YGCDDCVSTL HIKCVLGDMY HFKPGNKYGK AELVANDGMT RPFCIVCEER 501: CMFPSFLKAT VSDSTLVYAC SMNCAYDSYW KKWYYDESG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)