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AT3G06780.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
nucleus 0.746
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; Has 4376 Blast hits to 2354 proteins in 312 species: Archae - 2; Bacteria - 815; Metazoa - 2096; Fungi - 202; Plants - 751; Viruses - 45; Other Eukaryotes - 465 (source: NCBI BLink).
Protein Annotations
DNASU:819863eggNOG:ENOG410J2GGeggNOG:ENOG41118KTEMBL:AC023912EMBL:CP002686EnsemblPlants:AT3G06780EnsemblPlants:AT3G06780.1
entrez:819863GeneID:819863Gramene:AT3G06780.1hmmpanther:PTHR36751hmmpanther:PTHR36751:SF1HOGENOM:HOG000090899KEGG:ath:AT3G06780
OMA:VICWIALPhylomeDB:Q9M7Y4Proteomes:UP000006548RefSeq:NP_566293.1STRING:3702.AT3G06780.1TAIR:AT3G06780UniGene:At.18838
UniGene:At.74889UniProt:Q9M7Y4
Coordinates (TAIR10) chr3:+:2143634..2144239
Molecular Weight (calculated) 21448.30 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.13
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSLIADTV TVCTAKQGIA FGKSLLQRLD LANHISFADS VVDHQSPGGG IVQASAIIFP VDAIAPPPVR SSSYKTIRRI RKKRRTRRVS FGGDGDDAGD
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)